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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1425965_1441727_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1425965 - 1441727
Intron Length:
15763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
TTCTTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTAATTTAAAA
Flanking Amino Acid:
SAKLIRDKVAGHSLGYGFVN
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.9
0.67
0.8
77
31.7
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
57.6
0.23
1.6
69.15
36.3

Associated Gene:

Gene:
ELAVL1
Ensembl Gene ID:
ENSAPLG00000003139
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047490
1414646 - 1453966
39321
ENSAPLT00000031438
1414660 - 1464252
49593
ENSAPLT00000026943
1414660 - 1465403
50744
ENSAPLT00000003195
1414646 - 1453966
39321