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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1441832_1442699_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1441832 - 1442699
Intron Length:
868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGT
5'SS Class:
strong_major
3'SS Sequence:
AACCTTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATTATTAACC
Flanking Amino Acid:
GLRLQSKTIKVSYARPSSEV
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.5
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
68.4
0.41
1.1
71.5
37.6
Minor 5ss
38.3
-1.3
3.4
56.2
48
Minor BPS
66.9
0.51
1.6
73.71
36.2

Associated Gene:

Gene:
ELAVL1
Ensembl Gene ID:
ENSAPLG00000003139
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031438
1414660 - 1464252
49593
ENSAPLT00000026943
1414660 - 1465403
50744
ENSAPLT00000003195
1414646 - 1453966
39321
ENSAPLT00000047490
1414646 - 1453966
39321