Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1442854_1446318_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1442854 - 1446318

Intron Length:

3465

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GTTTGGTTAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTTATT

Flanking Amino Acid:

NSRVLVDQTTGLSRGVAFIR

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

23.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.23

1.2

60.3

44.1

Minor 5ss

37.4

-1.4

2.9

50.4

Minor BPS

69.2

0.69

1.5

86.8

32.8

Associated Gene:

Gene:

ELAVL1

Ensembl Gene ID:

ENSAPLG00000003139

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047490

1414646 - 1453966

39321

ENSAPLT00000003195

1414646 - 1453966

39321