Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1442854_1465362_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1442854 - 1465362

Intron Length:

22509

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTACTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AATGTTTTAATC

Flanking Amino Acid:

NSRVLVDQTTGMEKGRQLSF

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

23.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.7

0.83

0.7

82.1

28.2

Minor 5ss

37.4

-1.4

2.9

50.4

Minor BPS

61.6

0.34

1.3

64.86

35.1

Associated Gene:

Gene:

ELAVL1

Ensembl Gene ID:

ENSAPLG00000003139

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026943

1414660 - 1465403

50744