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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1446545_1452227_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1446545 - 1452227
Intron Length:
5683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCCAT
U12 Branch Point Sequence:
CTGCCCAGATAT
Flanking Amino Acid:
GPVHHQAQRFRSAENQDLPP
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
69.5
0.49
1.2
78.7
34.9
Major PPT
81.8
0.72
0.8
73.6
37
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
41
-0.6
1.9
56.85
44.8

Associated Gene:

Gene:
ELAVL1
Ensembl Gene ID:
ENSAPLG00000003139
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047490
1414646 - 1453966
39321