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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1452342_1453641_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1452342 - 1453641
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTATTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTACATGAAAT
Flanking Amino Acid:
TSGTPQFGNPWFSPMGVDHM
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1
63.4
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.1
0.63
1
73.8
41.4
Minor 5ss
44
-0.7
3.3
60.4
46.7
Minor BPS
56.8
0.29
1.9
81.03
39.5

Associated Gene:

Gene:
ELAVL1
Ensembl Gene ID:
ENSAPLG00000003139
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047490
1414646 - 1453966
39321