About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1472813_1472866_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1472813 - 1472866
Intron Length:
54

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAGCTACA
5'SS Class:
major
3'SS Sequence:
GGAGTGGTATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCCTCCTGATGA
Flanking Amino Acid:
HTPATSTRALGEQKKDVAWR
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
65.2
40.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
42.2
-0.4
1.7
39.7
47.7
Minor 5ss
29.4
-2.4
3.9
33.9
41.7
Minor BPS
47.8
-0.1
2
59.61
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002793
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002867
1472773 - 1492597
19825