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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1480151_1480960_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1480151 - 1480960
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCAAT
U12 Branch Point Sequence:
GTGGCACCAATT
Flanking Amino Acid:
DLDLGQIITISITATAASIG
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
51.7
0.04
1.2
60.3
34.2
Major PPT
82.1
0.72
0.7
76.4
25.6
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
41.8
-0.5
2.1
59.02
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002793
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029642
1477773 - 1492693
14921
ENSAPLT00000027514
1472773 - 1492597
19825
ENSAPLT00000002867
1472773 - 1492597
19825
ENSAPLT00000031844
1477773 - 1492597
14825