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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1481156_1482646_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1481156 - 1482646
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTATTTATCA
Flanking Amino Acid:
ALLIALATSSSSATLPITLK
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
0.7
77.1
24.8
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
56.3
0.19
1.7
68.05
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002793
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029642
1477773 - 1492693
14921
ENSAPLT00000002867
1472773 - 1492597
19825
ENSAPLT00000031844
1477773 - 1492597
14825