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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1482881_1483092_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1482881 - 1483092
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATCTG
5'SS Class:
major
3'SS Sequence:
TTATTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATCCCCATAAAT
Flanking Amino Acid:
AVMKIVSMAVWYFPFGIVFL
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.8
43.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
89.4
0.89
0.7
84.9
29.5
Minor 5ss
37.3
-1.4
3.1
46.6
43.1
Minor BPS
56.9
0.3
1.8
74.67
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002793
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031844
1477773 - 1492597
14825
ENSAPLT00000027514
1472773 - 1492597
19825
ENSAPLT00000002867
1472773 - 1492597
19825