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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1482881_1487566_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1482881 - 1487566
Intron Length:
4686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGGT
5'SS Class:
major
3'SS Sequence:
TTATTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATCCCCATAAAT
Flanking Amino Acid:
SSADALLDLIRYFPFGIVFL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
67.3
44.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
89.4
0.89
0.7
84.9
29.5
Minor 5ss
38.9
-1.3
3.5
58.8
45.7
Minor BPS
56.9
0.3
1.8
74.67
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002793
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029642
1477773 - 1492693
14921