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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1495472_1495727_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1495472 - 1495727
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTGAG
U12 Branch Point Sequence:
GCTGCTTGAGCT
Flanking Amino Acid:
ADREFQKKFKFEGSITVLTQ
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
46.9
-0.1
1.7
45
47.8
Major PPT
80.3
0.68
1
76.9
42.1
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
48.4
-0
1.8
65.22
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027829
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020191
1494866 - 1500695
5830