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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1496183_1496633_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1496183 - 1496633
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
RPPAYLRPGGGGDASRASGR
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027829
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020191
1494866 - 1500695
5830