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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1497046_1498199_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1497046 - 1498199
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGGCCA
5'SS Class:
major
3'SS Sequence:
CTTTTTACCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCA
Flanking Amino Acid:
PAVEPRSTKMDYPKPGSVAS
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
55.8
43
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.8
0.63
0.8
73.7
29.9
Minor 5ss
36.7
-1.5
3.2
39.7
45.8
Minor BPS
64.7
0.46
1.6
73.92
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027829
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020191
1494866 - 1500695
5830