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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1498888_1500692_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1498888 - 1500692
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTAATTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTTCTTAATT
Flanking Amino Acid:
MRHPEGKGAMV
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.8
0.65
1
73.2
41.7
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
83.2
1.12
1
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027829
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020191
1494866 - 1500695
5830