Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1506490_1507216_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1506490 - 1507216

Intron Length:

727

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TCTTGTTTCACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

73.7

31.1

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

84.2

0.77

0.8

79.1

32.9

Minor 5ss

36.2

-1.6

2.8

41.9

38.9

Minor BPS

53.3

0.1

2.2

70.26

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011711

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012198

1506394 - 1513346

6953