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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1507357_1508355_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1507357 - 1508355
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCATTCTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGCTCCTTACTC
Flanking Amino Acid:
MLDFLRSKKLQGGHPEVPG
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
73.7
0.53
1
68.6
37
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
65.3
0.46
1.6
70.68
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011711
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012198
1506394 - 1513346
6953