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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1508615_1511501_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1508615 - 1511501
Intron Length:
2887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
CCAGATTAAATT
Flanking Amino Acid:
GRCSEPTYSAGSLFCMPTKF
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
65.7
40.1
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
43.3
-0.4
1.8
52.42
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011711
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012198
1506394 - 1513346
6953