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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1512284_1513018_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1512284 - 1513018
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTGTCTCTAACT
Flanking Amino Acid:
SCSSGDPCLLRESQGGEKCL
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
77.3
0.61
0.9
70.9
33.5
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
72.3
0.78
1.6
88.53
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011711
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012198
1506394 - 1513346
6953