About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1515563_1515972_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1515563 - 1515972
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTGCTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCCAC
U12 Branch Point Sequence:
CATCCCACAGCG
Flanking Amino Acid:
GWEVFAITQAVRDWTEDESS
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
53.6
0.09
1.2
64.1
33.9
Major PPT
85.4
0.8
0.8
77.5
36.9
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
42.2
-0.7
2
47.88
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017048
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045584
1514654 - 1517748
3095