About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1525940_1526970_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1525940 - 1526970
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATCACA
Flanking Amino Acid:
SPAGPGAAATEASATPVPGH
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
100
1.24
0.5
100
0
Major PPT
85.9
0.81
0.7
81.1
29.3
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
60.3
0.32
2
79.79
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000921
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028655
1524944 - 1529889
4946
ENSAPLT00000000899
1525276 - 1529889
4614