About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1529277_1529548_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1529277 - 1529548
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCATCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ACTGTTAAAACT
Flanking Amino Acid:
KTLAAGAQASSSGTAVTTAE
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.1
0.72
0.8
74.3
35.1
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
44.8
-0.3
1.9
61.83
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011378
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011833
1529180 - 1531477
2298