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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1529699_1530077_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1529699 - 1530077
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
AAGTCCTTAAAC
Flanking Amino Acid:
LQLRYTEISKRSQPPPRLPV
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
86.6
0.82
0.7
78.3
30.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
71.1
0.64
1.4
71.74
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011378
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011833
1529180 - 1531477
2298