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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1530128_1530207_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1530128 - 1530207
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGGTG
5'SS Class:
major
3'SS Sequence:
CCTTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
ATCCCCTGAGAC
Flanking Amino Acid:
IQRLRNFAAGRDLQAKLQLR
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.9
42.4
Major BPS
75
0.62
1.1
77.2
36
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
26.9
-2.6
3.5
29
43.5
Minor BPS
47
-0.2
1.8
57.01
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011378
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037092
1526278 - 1530258
3981
ENSAPLT00000024918
1529180 - 1530258
1079
ENSAPLT00000011833
1529180 - 1531477
2298