About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_155879_157493_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155879 - 157493
Intron Length:
1615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CCTCACTTAATT
Flanking Amino Acid:
GETPIAVMGEFSDLTSMSPT
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
63.2
0.49
1.6
74.17
42.9

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025872
153664 - 185246
31583
ENSAPLT00000022144
154282 - 185246
30965
ENSAPLT00000004524
155573 - 181887
26315