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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_157648_157991_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
157648 - 157991
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
GTCCATTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAATAT
U12 Branch Point Sequence:
ACATCCCAAATA
Flanking Amino Acid:
RQFLLKWSFYSSMVIRDLTL
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
48.9
-0
1.1
45
36.5
Major PPT
74.9
0.56
0.9
65.4
40.8
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
48.2
-0.1
2
59.14
40.8

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022144
154282 - 185246
30965
ENSAPLT00000004524
155573 - 181887
26315
ENSAPLT00000025872
153664 - 185246
31583