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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1582252_1582453_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1582252 - 1582453
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGGGC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATTCTGAAAA
Flanking Amino Acid:
KVVLIGDSGVG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
56
41.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
32
-2.1
3.3
41.8
45
Minor BPS
59.5
0.3
1.5
67.87
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011046
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040616
1581441 - 1593694
12254