Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1582650_1584530_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1582650 - 1584530

Intron Length:

1881

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTGAGTACT

5'SS Class:

major

3'SS Sequence:

TTTGTGGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAA

U12 Branch Point Sequence:

ATTTCTCTAAAG

Flanking Amino Acid:

GQERYRAITSAYYRGAVGAL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.3

71.4

40.3

Major BPS

0.57

73.6

28.6

Major PPT

78.4

0.64

69.2

46.1

Minor 5ss

33.9

-1.8

2.7

39.4

38.9

Minor BPS

58.3

0.12

1.8

67.99

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040616

1581441 - 1593694

12254

ENSAPLT00000011498

1580394 - 1593694

13301