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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1595496_1606830_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1595496 - 1606830
Intron Length:
11335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGACC
5'SS Class:
major
3'SS Sequence:
GCTGTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
GTGCCGGGCACT
Flanking Amino Acid:
LVGSLVGLRQVPGAEGPGAA
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67
35.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
73.8
0.53
0.9
66.1
35.9
Minor 5ss
26.7
-2.7
3.2
34.1
41.8
Minor BPS
34.4
-1.1
2.7
54.77
46.5

Associated Gene:

Gene:
MARCHF2
Ensembl Gene ID:
ENSAPLG00000010859
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011313
1594515 - 1626128
31614