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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_160562_162152_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
160562 - 162152
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
GACTTCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GCCTTTGTAACT
Flanking Amino Acid:
LIPDVLRPVPSTLTQAIRNF
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
79.3
0.66
0.9
73
37
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
50.1
0.08
2
67.13
44.4

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022144
154282 - 185246
30965
ENSAPLT00000004524
155573 - 181887
26315
ENSAPLT00000025872
153664 - 185246
31583