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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1607037_1610221_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1607037 - 1610221
Intron Length:
3185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTGACCGTGATT
Flanking Amino Acid:
STVIKALGAQSDGPICRICH
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
67
44.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
76.5
0.6
0.8
73.9
31.2
Minor 5ss
31.1
-2.2
3.2
39.3
46.1
Minor BPS
48.6
-0
2.1
67.09
44.4

Associated Gene:

Gene:
MARCHF2
Ensembl Gene ID:
ENSAPLG00000010859
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011313
1594515 - 1626128
31614