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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1610418_1622870_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1610418 - 1622870
Intron Length:
12453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCCTTCTCACCT
Flanking Amino Acid:
VERRPRPLTEWLKDPGPRNE
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
66.4
44.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81.2
0.7
0.7
76.8
25.2
Minor 5ss
35.7
-1.6
3.7
56.5
47.7
Minor BPS
48.3
-0
1.9
62.74
47.7

Associated Gene:

Gene:
MARCHF2
Ensembl Gene ID:
ENSAPLG00000010859
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011313
1594515 - 1626128
31614