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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_162305_164270_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
162305 - 164270
Intron Length:
1966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCTTTTTTCATG
Flanking Amino Acid:
SSDSSTALPSSEEEHEGTLP
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
68
39.7
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.7
85.7
27.7
Minor 5ss
38.6
-1.3
3
50.6
45.6
Minor BPS
48.9
-0.2
1.8
53.3
43.2

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022144
154282 - 185246
30965
ENSAPLT00000004524
155573 - 181887
26315
ENSAPLT00000025872
153664 - 185246
31583