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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1631513_1632734_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1631513 - 1632734
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCCACCCTAAGC
Flanking Amino Acid:
WKRFADKLGKANMTLDPDTA
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
75.9
0.58
0.7
69
31.5
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
48.3
-0.1
2
59.67
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009418
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009801
1630992 - 1636039
5048