About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1641279_1641536_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1641279 - 1641536
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTGACCTGACCT
Flanking Amino Acid:
GEESQGLYTKVNVTLDPDTA
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
57.9
0.33
1.8
77.76
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025050
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027689
1636726 - 1642865
6140