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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_164384_164706_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
164384 - 164706
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
AGCTAATGAGAT
Flanking Amino Acid:
LQLLYRRHCEATLDVVMNLQ
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
82.4
29.7
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
75.8
0.58
1
76.9
37.3
Minor 5ss
33
-1.9
2.7
43.8
43.3
Minor BPS
38.6
-0.7
1.9
52.31
41.2

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022144
154282 - 185246
30965
ENSAPLT00000004524
155573 - 181887
26315
ENSAPLT00000025872
153664 - 185246
31583