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Intron Name: Anas_platyrhynchos_platyrhynchos_29_165844_166782_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

165844 - 166782

Intron Length:

939

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAGCT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTAAATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTAAAT

U12 Branch Point Sequence:

CATGCTCTAAAT

Flanking Amino Acid:

MRQQPIHQKQRYRPVQKMDG

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

72.5

37.3

Major BPS

69.8

0.49

1.1

75.5

35.2

Major PPT

62.5

0.28

56.2

38.1

Minor 5ss

31.7

-2.1

3.6

47.8

47.9

Minor BPS

48.8

-0

1.9

66.85

43.7

Associated Gene:

Gene:

RFX2

Ensembl Gene ID:

ENSAPLG00000004369

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025872

153664 - 185246

31583

ENSAPLT00000022144

154282 - 185246

30965

ENSAPLT00000004524

155573 - 181887

26315