Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1668961_1669496_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1668961 - 1669496

Intron Length:

536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGACCT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTCAC

U12 Branch Point Sequence:

CTGCCCTTCACT

Flanking Amino Acid:

ECYDLSADTWRTCQPLPMAL

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.8

74.2

36.1

Major BPS

65.1

0.38

1.1

68.9

36.5

Major PPT

0.56

0.9

68.3

37.4

Minor 5ss

29.2

-2.4

3.1

45.5

Minor BPS

0.49

1.8

77.11

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009942

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010364

1668384 - 1671811

3428