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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_166903_170013_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
166903 - 170013
Intron Length:
3111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTGATACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCAACGTTGATA
Flanking Amino Acid:
MGLRTRRLGTRGNSKYHYYG
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.2
0.61
0.9
70.5
40.1
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
48.2
-0.1
2.1
59.34
40.8

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022144
154282 - 185246
30965
ENSAPLT00000004524
155573 - 181887
26315
ENSAPLT00000025872
153664 - 185246
31583