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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1674379_1675271_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1674379 - 1675271
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTGGTTTAATT
Flanking Amino Acid:
CVTGVVLGARARSYMTGTIA
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
64.2
0.53
1.8
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010040
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010446
1674266 - 1678090
3825