About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1675395_1677706_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1675395 - 1677706
Intron Length:
2312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGGC
5'SS Class:
major
3'SS Sequence:
CTTTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCCTTTTATT
Flanking Amino Acid:
QMAAADSATMATLGAVFGLT
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
65.4
40.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.5
0.89
0.7
84.1
29.7
Minor 5ss
29.1
-2.4
3.5
32.5
42.6
Minor BPS
61
0.43
1.6
76.99
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010040
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010446
1674266 - 1678090
3825