Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1693423_1694667_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1693423 - 1694667

Intron Length:

1245

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACTA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCCCTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAC

U12 Branch Point Sequence:

ATTTTCTTGACT

Flanking Amino Acid:

TNYFLQYISSSIENSTNSAD

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

76.9

33.7

Major BPS

73.9

0.59

65.3

41.6

Major PPT

82.4

0.73

0.7

74.9

30.4

Minor 5ss

30.1

-2.3

3.1

38.6

46.4

Minor BPS

83.3

1.13

0.9

93.1

27.8

Associated Gene:

Gene:

RANBP3

Ensembl Gene ID:

ENSAPLG00000010044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023782

1686006 - 1727674

41669

ENSAPLT00000010491

1686006 - 1727674

41669