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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1699208_1700623_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1699208 - 1700623
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
AATTCCCTACTT
Flanking Amino Acid:
ILIHGQAPSAGLPSQKPKEQ
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
79.3
0.66
0.8
73
30.6
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
56
0.27
1.9
76.47
40.1

Associated Gene:

Gene:
RANBP3
Ensembl Gene ID:
ENSAPLG00000010044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023782
1686006 - 1727674
41669
ENSAPLT00000010491
1686006 - 1727674
41669