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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1701220_1701893_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1701220 - 1701893
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAT
Flanking Amino Acid:
PSTGNSDSEQGIISKSLNFK
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71
0.47
1
68.6
41.4
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
67.7
0.64
1.5
85.71
33.9

Associated Gene:

Gene:
RANBP3
Ensembl Gene ID:
ENSAPLG00000010044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023782
1686006 - 1727674
41669