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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1701966_1704774_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1701966 - 1704774
Intron Length:
2809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTGACCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
TTCCCCTTGACC
Flanking Amino Acid:
SLTQFPPSQSVTKNNVFMPS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
67.7
0.4
0.9
60.7
34
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
76.6
0.82
1.2
79.63
35.6

Associated Gene:

Gene:
RANBP3
Ensembl Gene ID:
ENSAPLG00000010044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023782
1686006 - 1727674
41669
ENSAPLT00000010491
1686006 - 1727674
41669