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Intron Name: Anas_platyrhynchos_platyrhynchos_29_170196_175444_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

170196 - 175444

Intron Length:

5249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TCCATGCCTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

CTTTCTTTATTT

Flanking Amino Acid:

SHKSSLLNSHLQWLLDNYET

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

75.2

35.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

60.9

0.25

1.1

59.3

Minor 5ss

-0.8

2.8

57.2

40.7

Minor BPS

69.3

0.68

1.6

83.14

Associated Gene:

Gene:

RFX2

Ensembl Gene ID:

ENSAPLG00000004369

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022144

154282 - 185246

30965

ENSAPLT00000004524

155573 - 181887

26315