About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_170196_180311_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
170196 - 180311
Intron Length:
10116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTAGC
5'SS Class:
major
3'SS Sequence:
TCCATGCCTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
SHTSRSSPATLQWLLDNYET
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
69.2
41.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
60.9
0.25
1.1
59.3
36
Minor 5ss
42.7
-0.8
2.5
54.7
42.7
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
RFX2
Ensembl Gene ID:
ENSAPLG00000004369
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025872
153664 - 185246
31583