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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1704862_1704949_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1704862 - 1704949
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTCTAATT
Flanking Amino Acid:
ADGSSPEDGDESDREDGNYC
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
75
0.86
1.6
92.5
29.7

Associated Gene:

Gene:
RANBP3
Ensembl Gene ID:
ENSAPLG00000010044
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023782
1686006 - 1727674
41669
ENSAPLT00000010491
1686006 - 1727674
41669