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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1731874_1735222_F

Intron Information:

Intron Rank:
143916
Intron Class:
major
Intron Phase:
Intron Coordinates:
1731874 - 1735222
Intron Length:
3349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGGA
5'SS Class:
major
3'SS Sequence:
CTTTCACATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTCTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.4
39.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
77.6
0.62
0.9
74.8
34.1
Minor 5ss
27.5
-2.6
2.9
32.7
42
Minor BPS
63.1
0.41
1.8
71.5
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027574
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044513
1731724 - 1736247
4524