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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_29_1735369_1735716_F

Intron Information:

Intron Rank:
143917
Intron Class:
major
Intron Phase:
Intron Coordinates:
1735369 - 1735716
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTCTGCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
73.5
30.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.4
0.57
0.9
70
40.3
Minor 5ss
26.9
-2.7
3
32.5
42.3
Minor BPS
46.9
-0.1
2.3
74.31
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027574
Chromosome:
29

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044513
1731724 - 1736247
4524